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Been a long time. Actually my original thought was to write my autobiographical sketch in parts and end it with the results of this year's CASP (and in my fantasies, I solve the protein folding problem by then). But reality struck me down and I started thinking, what if my programs suck big time in CASP ? So, abandoned the idea of my autobiographical sketch. Unfortunately, after college was where most of the fun began, as far as protein folding is concerned, so you people missed the fun part, but never mind, it will come at a later date. I do have a lot of small things to share, and I have been sending myself mails to remember them, so here they come: Saw this on Scientific american today : Take a cylinder with radius 'z' and height 'a'. What is the volume ? PiZZA... HEE HEE HEE... I like it... I've heard of the one billion euro project for future science or something like that. And most projects are interesting, but I had one of my own. I t...

Quantum mechanics

      I was reading "Essentials of Statistical Thermodynamics" by Nash today. Several things that he said made me realize a lot of truths about Stat ThermoDyn. He starts by saying that thermodynamics teaches us what happens and how much of it happens, but it does not tell us why it happens. Most such textbooks would probably say the same thing, and then proceed to drown us in jargon and all manner of equations. My favorite part is when these oh-so-smart guys shove my ignorance in my face by sating things like "It is trivial to extrapolate from this 3 term equation to a 30 term equation". And I am left wondering what the hell happened. Needless to say, from that point onwards I am too annoyed to make sense of anything. So Nash takes us through the subject with minimal assumptions and the Boltzmann distribution almost seems like a natural extension of basic probability which actually it is. So, reading his book got me thinking about a lot of other things and I ende...

Alien Invasion

      I was watching another alien invasion movie today. And I feel that this whole Martians/venusians or Alpha centaurians are vulnerable is a big problem with the whole genre. I believe that no civilization can really discover space travel without first discovering the secrets of health and disease. And if they have discovered that, then it is only a matter of time before they realize that they dont need huge machines and energy expensive robots and exoskeletons etc. All that they will do is send an earth-rover initially equipped with a small biological specimen collector/analyzer and find out the genetic makeup of earthlings. Once they do that, they will obviously realize that humans are susceptible to a lot of diseases. They dont need to understand english, they dont need to communicate with us (who the hell except us wants to anyway ?). It is our (rather Hollywood's) stupidity to think that Aliens would come to Earth and stand before us and in a comma...

Letter to atheists

Found this stupid letter to all atheists on the internet. Just had to send a reply. So here it is. My responses to the 'questions' preceded by "----". Dear Atheist, Do you think its a coincidence that... of billions of stars and planets in the many galaxies, only earth has life, and abundance of it? ---- what makes you think so ? the sun is 400 times the size of the earth's moon, 400 times further away from earth than the moon, yet they look both proportionally the same size in our sky? ---- Do you know how other moons look from their planets ? the sun lights the days nicely, while the moon glimmers in the night sweetly and the clouds bring forth rain to water our crops, which bring forth food in your stomach? ---- Mostly due to eart...

Why corruption will be a thing of the past.

I have been doing some thinking recently on the corruption rampant in India. Why is nobody doing anything about it ? It is not that we lack the infrastructure to deal with it. Far from it. What we lack is in my opinion the will to police it. So, the real question is why are we not policing it ? After much thought on this matter, I have come to the conclusion that till now corruption was in the National security interest. Till now. Recent events tell us that it has lost that quality and hence, corruption will become punishable once again. Let me explain. Fig 1. Fictitious 'National average bribe taken' around the time of 1993 Bombay blasts. Imagine you are responsible for finding out terrorist or insurgency activities. How would you go about it ? You cannot have information about all the citizens of any country at your disposal. So, the easier way out is to have some kind of statistical test which will predict if terrorist activity is going to happen soon. How would you do that ...

My Shawshank Redemption

      I submitted my thesis today, and strangely I feel sad. I do not feel happy or even relieved. When I started my PhD, I thought by the end of it, I will feel like Norgay or Hillary and be on top of the world. I thought it would be a great success, and something never attempted before. But alas, all I feel is what Andy Dufresne might have felt like after escaping the Shawshank prison. My whole PhD has been nothing but a prison for my scientific spirit, incarcerated for all the wrong reasons. The writing of the thesis has been nothing less than Andy's escape from prison, crawling through 200 metres of sewerage. At the end of itall I feel is, "Well... I am free, now I have to bathe and cleanse my system to start afresh". Those are my thoughts exactly. At this end of the PhD, I feel like a fool undergoing all the stupidity and mediocrity. What meaning is left in PhD, I wonder.       I am sick and tired of it, and I do hope the damn thing gets accepted. Well, even if it i...

The nature of prophets

Hmmm, this has been a long time coming. At first I thought I will call this as “Was Jesus Christ an Atheist ?”. But then decided that maybe he was not. Maybe there is more than that to it otherise people would not follow him so blindly. So, before we go on, I would like to quote some guy on the internet who describes Christianity as: Christianity, noun: The belief that a cosmic Jewish Zombie who was his own father can make you live forever if you symbolically eat his flesh and telepathically tell him you accept him as your master, so he can remove an evil force from your soul that is present in humanity because a rib-woman was convinced by a talking snake to eat from a magical tree Ahem ahem. Well, when told in that way it does seem pretty stupid, and that is the important thing here. For example, what if I were to tell you, that I am the son of god, and ask you to rub Vicks vaporub on your chest, drinking neat scotch whiskey every night praying to me and you will ge...